IL_9YDD_184
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_184 not in the Motif Atlas
- Homologous match to IL_9PN5_190
- Geometric discrepancy: 0.1796
- The information below is about IL_9PN5_190
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.4
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 21
Unit IDs
9YDD|1|E|C|990
9YDD|1|E|G|991
9YDD|1|E|A|992
9YDD|1|E|A|993
9YDD|1|E|G|994
*
9YDD|1|E|C|1010
9YDD|1|E|G|1011
9YDD|1|E|U|1012
9YDD|1|E|A|1013
9YDD|1|E|G|1014
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein L2-A
- Chain SZ
- 40S ribosomal protein S14-B
- Chain Se
- Small ribosomal subunit protein eS26B
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