IL_9YDE_023

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|A|C|758
9YDE|1|A|U|759
9YDE|1|A|G|760
9YDE|1|A|A|761
9YDE|1|A|U|762
9YDE|1|A|G|763
*
9YDE|1|A|C|768
9YDE|1|A|G|769
9YDE|1|A|G|770
9YDE|1|A|A|771
9YDE|1|A|U|772
9YDE|1|A|G|773

Current chains

Chain A

25S RNA

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain Lc

60S ribosomal protein L28

Chain Lq

60S ribosomal protein L42-A