IL_9YDE_062

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|A|U|1645
9YDE|1|A|G|1646
9YDE|1|A|A|1647
9YDE|1|A|A|1648
9YDE|1|A|U|1649
*
9YDE|1|A|A|1806
9YDE|1|A|G|1807
9YDE|1|A|G|1808
9YDE|1|A|A|1809
9YDE|1|A|A|1810

Current chains

Chain A

25S RNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain Lb

60S ribosomal protein L27-A

Chain Li

60S ribosomal protein L34-A