IL_9YDE_067

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|A|U|1702
9YDE|1|A|U|1703
9YDE|1|A|A|1704
9YDE|1|A|U|1705
9YDE|1|A|C|1706
9YDE|1|A|A|1707
*
9YDE|1|A|U|1737
9YDE|1|A|C|1738
9YDE|1|A|U|1739
9YDE|1|A|U|1740
9YDE|1|A|A|1741
9YDE|1|A|U|1742
9YDE|1|A|G|1743

Current chains

Chain A

25S RNA

Nearby chains

Chain Li

60S ribosomal protein L34-A