IL_9YDE_117
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 9YDE|1|A|A|3180, 9YDE|1|A|A|3186, 9YDE|1|A|C|3206, 9YDE|1|A|U|3207, 9YDE|1|A|A|3209
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDE|1|A|U|3179
9YDE|1|A|A|3180
9YDE|1|A|C|3181
9YDE|1|A|G|3182
9YDE|1|A|A|3183
9YDE|1|A|A|3184
9YDE|1|A|U|3185
9YDE|1|A|A|3186
9YDE|1|A|A|3187
9YDE|1|A|G|3188
*
9YDE|1|A|C|3204
9YDE|1|A|G|3205
9YDE|1|A|C|3206
9YDE|1|A|U|3207
9YDE|1|A|G|3208
9YDE|1|A|A|3209
9YDE|1|A|A|3210
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LH
- Large ribosomal subunit protein eL6B
- Chain LK
- 60S ribosomal protein L9-A
- Chain LO
- 60S ribosomal protein L14-A
- Chain LQ
- 60S ribosomal protein L16-A
- Chain LU
- 60S ribosomal protein L20-A
- Chain Lh
- 60S ribosomal protein L33-A
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