IL_9YDE_163

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

9YDE|1|E|A|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|E|G|514
9YDE|1|E|A|515
9YDE|1|E|G|516
*
9YDE|1|E|C|536
9YDE|1|E|G|537
9YDE|1|E|A|538
9YDE|1|E|G|539
9YDE|1|E|G|540
9YDE|1|E|A|541
9YDE|1|E|A|542
9YDE|1|E|C|543

Current chains

Chain E

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sg

40S ribosomal protein S30-A