IL_9YDE_166

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|E|A|550
9YDE|1|E|G|551
9YDE|1|E|G|552
9YDE|1|E|G|553
9YDE|1|E|C|554
9YDE|1|E|A|555
9YDE|1|E|A|556
9YDE|1|E|G|557
*
9YDE|1|E|C|587
9YDE|1|E|U|588

Current chains

Chain E

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S2

Chain SW

40S ribosomal protein S9-A

Chain Sg

40S ribosomal protein S30-A