IL_9YDE_176

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGAGUGUUCAAAGCAG*UCGAAU

Length

22 nucleotides

Bulged bases

9YDE|1|E|G|765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|E|A|760
9YDE|1|E|G|761
9YDE|1|E|A|762
9YDE|1|E|G|763
9YDE|1|E|U|764
9YDE|1|E|G|765
9YDE|1|E|U|766
9YDE|1|E|U|767
9YDE|1|E|C|768
9YDE|1|E|A|769
9YDE|1|E|A|770
9YDE|1|E|A|771
9YDE|1|E|G|772
9YDE|1|E|C|773
9YDE|1|E|A|774
9YDE|1|E|G|775
*
9YDE|1|E|U|785
9YDE|1|E|C|786
9YDE|1|E|G|787
9YDE|1|E|A|788
9YDE|1|E|A|789
9YDE|1|E|U|790

Current chains

Chain E

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SW

40S ribosomal protein S9-A

Chain Sd

40S ribosomal protein S24-A