IL_9YDE_180

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

9YDE|1|E|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDE_180 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2316

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.9

Basepair signature

cWW-L-cWW

Number of instances in this motif group

193

Unit IDs

9YDE|1|E|G|868
9YDE|1|E|A|869
*
9YDE|1|E|U|958
9YDE|1|E|U|959
9YDE|1|E|U|960

Current chains

Chain E

18S rRNA

Nearby chains

Chain SY

40S ribosomal protein S13

Chain Sf

40S ribosomal protein S27-A