IL_9YDE_190

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|E|G|1111
9YDE|1|E|G|1112
9YDE|1|E|A|1113
9YDE|1|E|G|1114
9YDE|1|E|U|1115
9YDE|1|E|A|1116
9YDE|1|E|U|1117
9YDE|1|E|G|1118
*
9YDE|1|E|U|1129
9YDE|1|E|G|1130
9YDE|1|E|A|1131
9YDE|1|E|A|1132
9YDE|1|E|A|1133
9YDE|1|E|C|1134

Current chains

Chain E

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Lp

60S ribosomal protein L41-A

Chain Sc

40S ribosomal protein S23-A