IL_9YPG_018

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9YPG|1|5|G|409, 9YPG|1|5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|G|387
9YPG|1|5|A|388
9YPG|1|5|A|389
9YPG|1|5|C|390
*
9YPG|1|5|G|401
9YPG|1|5|A|402
9YPG|1|5|G|403
9YPG|1|5|U|404
9YPG|1|5|U|405
9YPG|1|5|C|406
9YPG|1|5|A|407
9YPG|1|5|A|408
9YPG|1|5|G|409
9YPG|1|5|A|410
9YPG|1|5|G|411
9YPG|1|5|G|412
9YPG|1|5|G|413
9YPG|1|5|C|414

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain P

Large ribosomal subunit protein uL22

Chain Y

uL24

Chain l

eL39