IL_9YPG_024

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

9YPG|1|5|U|467, 9YPG|1|5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|A|466
9YPG|1|5|U|467
9YPG|1|5|U|468
9YPG|1|5|C|469
9YPG|1|5|A|470
9YPG|1|5|A|471
9YPG|1|5|C|472
*
9YPG|1|5|G|682
9YPG|1|5|C|683
9YPG|1|5|G|684
9YPG|1|5|C|685
9YPG|1|5|A|686
9YPG|1|5|U|687
9YPG|1|5|U|688
9YPG|1|5|U|689

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain r

eL28