IL_9YPG_030
3D structure
- PDB id
- 9YPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAU*AC
- Length
- 5 nucleotides
- Bulged bases
- 9YPG|1|5|A|509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPG_030 not in the Motif Atlas
- Homologous match to IL_8GLP_032
- Geometric discrepancy: 0.1256
- The information below is about IL_8GLP_032
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 188
Unit IDs
9YPG|1|5|G|508
9YPG|1|5|A|509
9YPG|1|5|U|510
*
9YPG|1|5|A|649
9YPG|1|5|C|650
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain a
- 60S ribosomal protein L27a
Coloring options: