IL_9YPG_031
3D structure
- PDB id
- 9YPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUCCC*GUCGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPG_031 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.2986
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.6
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
9YPG|1|5|C|519
9YPG|1|5|U|520
9YPG|1|5|C|521
9YPG|1|5|C|522
9YPG|1|5|C|523
*
9YPG|1|5|G|638
9YPG|1|5|U|639
9YPG|1|5|C|640
9YPG|1|5|G|641
9YPG|1|5|G|642
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
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