IL_9YPG_037

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9YPG|1|5|G|748, 9YPG|1|5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|G|745
9YPG|1|5|A|746
9YPG|1|5|A|747
9YPG|1|5|G|748
9YPG|1|5|G|749
9YPG|1|5|U|750
9YPG|1|5|G|751
9YPG|1|5|G|752
*
9YPG|1|5|U|911
9YPG|1|5|G|912
9YPG|1|5|U|913
9YPG|1|5|U|914
9YPG|1|5|A|915
9YPG|1|5|C|916
9YPG|1|5|A|917
9YPG|1|5|G|918
9YPG|1|5|C|919

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a