IL_9YPG_053

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

9YPG|1|5|A|1650, 9YPG|1|5|G|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|G|1522
9YPG|1|5|A|1523
9YPG|1|5|A|1524
9YPG|1|5|A|1525
9YPG|1|5|G|1526
*
9YPG|1|5|C|1648
9YPG|1|5|U|1649
9YPG|1|5|A|1650
9YPG|1|5|G|1651
9YPG|1|5|U|1652
9YPG|1|5|A|1653
9YPG|1|5|G|1654
9YPG|1|5|C|1655

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain a

60S ribosomal protein L27a

Chain j

Ribosomal protein L37