IL_9YPG_080

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9YPG|1|5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|U|1957
9YPG|1|5|A|1958
9YPG|1|5|U|1959
9YPG|1|5|A|1960
9YPG|1|5|G|1961
9YPG|1|5|A|1962
9YPG|1|5|C|1963
9YPG|1|5|A|1964
9YPG|1|5|G|1965
*
9YPG|1|5|C|2022
9YPG|1|5|C|2023
9YPG|1|5|G|2024
9YPG|1|5|A|2025
9YPG|1|5|A|2026

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein