IL_9YPG_104
3D structure
- PDB id
- 9YPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPG_104 not in the Motif Atlas
- Geometric match to IL_8GLP_305
- Geometric discrepancy: 0.0512
- The information below is about IL_8GLP_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.3
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
9YPG|1|5|G|2847
9YPG|1|5|G|2848
9YPG|1|5|A|2849
9YPG|1|5|A|2850
9YPG|1|5|G|2851
9YPG|1|5|U|2852
9YPG|1|5|C|2853
9YPG|1|5|G|2854
9YPG|1|5|G|2855
*
9YPG|1|5|C|3837
9YPG|1|5|U|3838
9YPG|1|5|G|3839
9YPG|1|5|U|3840
9YPG|1|5|C|3841
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain V
- Ribosomal protein L23
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