IL_9YPG_117

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9YPG|1|5|A|3785, 9YPG|1|5|C|3791, 9YPG|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|C|3781
9YPG|1|5|C|3782
9YPG|1|5|A|3783
9YPG|1|5|A|3784
9YPG|1|5|A|3785
9YPG|1|5|U|3786
9YPG|1|5|G|3787
9YPG|1|5|C|3788
9YPG|1|5|C|3789
9YPG|1|5|U|3790
9YPG|1|5|C|3791
9YPG|1|5|G|3792
*
9YPG|1|5|C|3808
9YPG|1|5|G|3809
9YPG|1|5|C|3810
9YPG|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41