IL_9YPG_126

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGG*CCGCCGGUGAAAUAC

Length

20 nucleotides

Bulged bases

9YPG|1|5|C|4041

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|G|3970
9YPG|1|5|G|3971
9YPG|1|5|A|3972
9YPG|1|5|G|3973
9YPG|1|5|G|3974
*
9YPG|1|5|C|4037
9YPG|1|5|C|4038
9YPG|1|5|G|4039
9YPG|1|5|C|4040
9YPG|1|5|C|4041
9YPG|1|5|G|4042
9YPG|1|5|G|4043
9YPG|1|5|U|4044
9YPG|1|5|G|4045
9YPG|1|5|A|4046
9YPG|1|5|A|4047
9YPG|1|5|A|4048
9YPG|1|5|U|4049
9YPG|1|5|A|4050
9YPG|1|5|C|4051

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA