IL_9YPG_129

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCGAGC*GGCUCUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|G|4094
9YPG|1|5|G|4095
9YPG|1|5|C|4096
9YPG|1|5|G|4097
9YPG|1|5|A|4098
9YPG|1|5|G|4099
9YPG|1|5|C|4100
*
9YPG|1|5|G|4108
9YPG|1|5|G|4109
9YPG|1|5|C|4110
9YPG|1|5|U|4111
9YPG|1|5|C|4112
9YPG|1|5|U|4113
9YPG|1|5|C|4114

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain BB

40S ribosomal protein S3a

Chain G

60S ribosomal protein L7a

Chain g

Large ribosomal subunit protein eL34