IL_9YPG_139
3D structure
- PDB id
- 9YPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPG_139 not in the Motif Atlas
- Homologous match to IL_9PN5_101
- Geometric discrepancy: 0.0884
- The information below is about IL_9PN5_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87767.5
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9YPG|1|5|C|4412
9YPG|1|5|C|4413
9YPG|1|5|A|4414
9YPG|1|5|A|4415
9YPG|1|5|G|4416
*
9YPG|1|5|C|4426
9YPG|1|5|G|4427
9YPG|1|5|A|4428
9YPG|1|5|C|4429
9YPG|1|5|G|4430
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
Coloring options: