IL_9YPG_152

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACAUUU*ACCAU

Length

11 nucleotides

Bulged bases

9YPG|1|5|C|4670, 9YPG|1|5|C|4671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|A|4624
9YPG|1|5|C|4625
9YPG|1|5|A|4626
9YPG|1|5|U|4627
9YPG|1|5|U|4628
9YPG|1|5|U|4629
*
9YPG|1|5|A|4669
9YPG|1|5|C|4670
9YPG|1|5|C|4671
9YPG|1|5|A|4672
9YPG|1|5|U|4673

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain V

Ribosomal protein L23

Chain W

eL24