IL_9YPG_158
3D structure
- PDB id
- 9YPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAGC*GAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPG_158 not in the Motif Atlas
- Homologous match to IL_8GLP_166
- Geometric discrepancy: 0.1753
- The information below is about IL_8GLP_166
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
9YPG|1|5|G|4743
9YPG|1|5|A|4744
9YPG|1|5|G|4745
9YPG|1|5|C|4746
*
9YPG|1|5|G|4954
9YPG|1|5|A|4955
9YPG|1|5|A|4956
9YPG|1|5|C|4957
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain f
- eL33
Coloring options: