IL_9YPG_226

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9YPG|1|9|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|9|G|952
9YPG|1|9|C|953
9YPG|1|9|U|954
9YPG|1|9|A|955
9YPG|1|9|G|956
*
9YPG|1|9|C|967
9YPG|1|9|U|968
9YPG|1|9|U|969
9YPG|1|9|G|970
9YPG|1|9|G|971
9YPG|1|9|A|972
9YPG|1|9|C|973
9YPG|1|9|C|974

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BB

40S ribosomal protein S3a

Chain OO

Small ribosomal subunit protein uS11