IL_9YPO_017
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 9YPO|1|5|G|409, 9YPO|1|5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPO_017 not in the Motif Atlas
- Geometric match to IL_8GLP_019
- Geometric discrepancy: 0.0668
- The information below is about IL_8GLP_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.4
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 11
Unit IDs
9YPO|1|5|G|387
9YPO|1|5|A|388
9YPO|1|5|A|389
9YPO|1|5|C|390
*
9YPO|1|5|G|401
9YPO|1|5|A|402
9YPO|1|5|G|403
9YPO|1|5|U|404
9YPO|1|5|U|405
9YPO|1|5|C|406
9YPO|1|5|A|407
9YPO|1|5|A|408
9YPO|1|5|G|409
9YPO|1|5|A|410
9YPO|1|5|G|411
9YPO|1|5|G|412
9YPO|1|5|G|413
9YPO|1|5|C|414
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- Large ribosomal subunit protein uL22
- Chain Y
- uL24
- Chain l
- eL39
Coloring options: