IL_9YPO_033

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

9YPO|1|5|A|932, 9YPO|1|5|G|933, 9YPO|1|5|A|935, 9YPO|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|A|732
9YPO|1|5|A|733
9YPO|1|5|G|734
9YPO|1|5|G|735
*
9YPO|1|5|C|928
9YPO|1|5|A|929
9YPO|1|5|G|930
9YPO|1|5|C|931
9YPO|1|5|A|932
9YPO|1|5|G|933
9YPO|1|5|C|934
9YPO|1|5|A|935
9YPO|1|5|G|935|||A
9YPO|1|5|C|936
9YPO|1|5|U|937

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a