IL_9YPO_039

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

9YPO|1|5|C|1210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPO_039 not in the Motif Atlas

Geometric match to IL_3W3S_001

Geometric discrepancy: 0.2016

The information below is about IL_3W3S_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9YPO|1|5|C|1086
9YPO|1|5|A|1087
*
9YPO|1|5|U|1209
9YPO|1|5|C|1210
9YPO|1|5|G|1211

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L7