IL_9YPO_064

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCGAAU*AAAC

Length

10 nucleotides

Bulged bases

9YPO|1|5|G|1741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|G|1739
9YPO|1|5|C|1740
9YPO|1|5|G|1741
9YPO|1|5|A|1742
9YPO|1|5|A|1743
9YPO|1|5|U|1744
*
9YPO|1|5|A|1786
9YPO|1|5|A|1787
9YPO|1|5|A|1788
9YPO|1|5|C|1789

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

Large ribosomal subunit protein uL18

Chain I

60S ribosomal protein L10

Chain T

eL21