IL_9YPO_094

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9YPO|1|5|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPO_094 not in the Motif Atlas

Homologous match to IL_9PN5_068

Geometric discrepancy: 0.107

The information below is about IL_9PN5_068

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9YPO|1|5|C|2613
9YPO|1|5|C|2614
*
9YPO|1|5|G|2724
9YPO|1|5|A|2725
9YPO|1|5|G|2726

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein L19

Chain g

Large ribosomal subunit protein eL34