IL_9YPO_103

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|G|2847
9YPO|1|5|G|2848
9YPO|1|5|A|2849
9YPO|1|5|A|2850
9YPO|1|5|G|2851
9YPO|1|5|U|2852
9YPO|1|5|C|2853
9YPO|1|5|G|2854
9YPO|1|5|G|2855
*
9YPO|1|5|C|3837
9YPO|1|5|U|3838
9YPO|1|5|G|3839
9YPO|1|5|U|3840
9YPO|1|5|C|3841

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain V

Ribosomal protein L23