IL_9YPO_116

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9YPO|1|5|A|3785, 9YPO|1|5|C|3791, 9YPO|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|C|3781
9YPO|1|5|C|3782
9YPO|1|5|A|3783
9YPO|1|5|A|3784
9YPO|1|5|A|3785
9YPO|1|5|U|3786
9YPO|1|5|G|3787
9YPO|1|5|C|3788
9YPO|1|5|C|3789
9YPO|1|5|U|3790
9YPO|1|5|C|3791
9YPO|1|5|G|3792
*
9YPO|1|5|C|3808
9YPO|1|5|G|3809
9YPO|1|5|C|3810
9YPO|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41