IL_9YPO_121

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9YPO|1|5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPO_121 not in the Motif Atlas

Homologous match to IL_8GLP_133

Geometric discrepancy: 0.06

The information below is about IL_8GLP_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.5

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9YPO|1|5|U|3927
9YPO|1|5|A|3928
9YPO|1|5|G|3929
*
9YPO|1|5|U|4181
9YPO|1|5|G|4182
9YPO|1|5|G|4183
9YPO|1|5|G|4184

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain o

Large ribosomal subunit protein eL42