IL_9YPO_125

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

9YPO|1|5|C|4041

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|G|3970
9YPO|1|5|G|3971
9YPO|1|5|A|3972
9YPO|1|5|G|3973
*
9YPO|1|5|C|4038
9YPO|1|5|G|4039
9YPO|1|5|C|4040
9YPO|1|5|C|4041
9YPO|1|5|G|4042
9YPO|1|5|G|4043
9YPO|1|5|U|4044
9YPO|1|5|G|4045
9YPO|1|5|A|4046
9YPO|1|5|A|4047
9YPO|1|5|A|4048
9YPO|1|5|U|4049
9YPO|1|5|A|4050
9YPO|1|5|C|4051

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA