IL_9YPO_208

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

9YPO|1|9|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|9|A|599
9YPO|1|9|G|600
9YPO|1|9|G|601
9YPO|1|9|G|602
9YPO|1|9|C|603
9YPO|1|9|A|604
9YPO|1|9|A|605
9YPO|1|9|G|606
9YPO|1|9|U|607
9YPO|1|9|C|608
*
9YPO|1|9|G|635
9YPO|1|9|C|636
9YPO|1|9|U|637

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

Small ribosomal subunit protein uS5

Chain DD

Ribosomal protein S3

Chain JJ

Ribosomal protein S9 (Predicted)

Chain ee

40S ribosomal protein S30