IL_9YPO_218
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPO_218 not in the Motif Atlas
- Homologous match to IL_9H3G_194
- Geometric discrepancy: 0.164
- The information below is about IL_9H3G_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.5
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9YPO|1|9|G|807
9YPO|1|9|A|808
9YPO|1|9|A|809
9YPO|1|9|A|810
9YPO|1|9|A|811
9YPO|1|9|A|812
9YPO|1|9|A|813
9YPO|1|9|U|814
9YPO|1|9|U|815
*
9YPO|1|9|A|849
9YPO|1|9|C|850
9YPO|1|9|C|851
9YPO|1|9|G|852
9YPO|1|9|C|853
9YPO|1|9|A|854
9YPO|1|9|G|855
9YPO|1|9|C|856
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain EE
- eS4 (S4 X isoform)
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain LL
- Ribosomal protein S11
- Chain WW
- Ribosomal protein S15a
Coloring options: