IL_9YPS_020
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCG*UC
- Length
- 5 nucleotides
- Bulged bases
- 9YPS|1|5|C|449
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPS_020 not in the Motif Atlas
- Geometric match to IL_8GLP_083
- Geometric discrepancy: 0.3268
- The information below is about IL_8GLP_083
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 72
Unit IDs
9YPS|1|5|G|448
9YPS|1|5|C|449
9YPS|1|5|G|450
*
9YPS|1|5|U|1297
9YPS|1|5|C|1298
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain e
- Ribosomal protein L32
- Chain f
- eL33
Coloring options: