IL_9YPS_023

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

9YPS|1|5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|5|A|466
9YPS|1|5|U|467
9YPS|1|5|U|468
9YPS|1|5|C|469
9YPS|1|5|A|470
9YPS|1|5|A|471
9YPS|1|5|C|472
*
9YPS|1|5|G|682
9YPS|1|5|C|683
9YPS|1|5|G|684
9YPS|1|5|C|685
9YPS|1|5|A|686
9YPS|1|5|U|687
9YPS|1|5|U|688
9YPS|1|5|U|689

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain r

eL28