IL_9YPS_055
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPS_055 not in the Motif Atlas
- Homologous match to IL_8GLP_059
- Geometric discrepancy: 0.0538
- The information below is about IL_8GLP_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.5
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
9YPS|1|5|C|1551
9YPS|1|5|G|1552
9YPS|1|5|A|1553
9YPS|1|5|A|1554
9YPS|1|5|G|1555
*
9YPS|1|5|U|1572
9YPS|1|5|G|1573
9YPS|1|5|G|1574
9YPS|1|5|A|1575
9YPS|1|5|G|1576
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain R
- Ribosomal protein L19
- Chain p
- eL43
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