IL_9YPS_090

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAG*CGAAAG

Length

11 nucleotides

Bulged bases

9YPS|1|5|A|2512, 9YPS|1|5|A|2513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|5|C|2446
9YPS|1|5|U|2447
9YPS|1|5|G|2448
9YPS|1|5|A|2449
9YPS|1|5|G|2450
*
9YPS|1|5|C|2509
9YPS|1|5|G|2510
9YPS|1|5|A|2511
9YPS|1|5|A|2512
9YPS|1|5|A|2513
9YPS|1|5|G|2514

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain A

Ribosomal protein L8

Chain g

Large ribosomal subunit protein eL34

Chain j

Ribosomal protein L37

Chain l

eL39