IL_9YPS_101
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPS_101 not in the Motif Atlas
- Homologous match to IL_9PN5_072
- Geometric discrepancy: 0.0767
- The information below is about IL_9PN5_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.4
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
9YPS|1|5|A|2832
9YPS|1|5|A|2833
9YPS|1|5|C|2834
9YPS|1|5|A|2835
9YPS|1|5|A|2836
9YPS|1|5|U|2837
9YPS|1|5|G|2838
*
9YPS|1|5|C|3850
9YPS|1|5|U|3851
9YPS|1|5|A|3852
9YPS|1|5|U|3853
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain P
- Large ribosomal subunit protein uL22
- Chain d
- eL31
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