IL_9YPS_117
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 9YPS|1|5|A|3785, 9YPS|1|5|C|3791, 9YPS|1|5|C|3810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPS_117 not in the Motif Atlas
- Homologous match to IL_8GLP_307
- Geometric discrepancy: 0.0746
- The information below is about IL_8GLP_307
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.3
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 9
Unit IDs
9YPS|1|5|C|3781
9YPS|1|5|C|3782
9YPS|1|5|A|3783
9YPS|1|5|A|3784
9YPS|1|5|A|3785
9YPS|1|5|U|3786
9YPS|1|5|G|3787
9YPS|1|5|C|3788
9YPS|1|5|C|3789
9YPS|1|5|U|3790
9YPS|1|5|C|3791
9YPS|1|5|G|3792
*
9YPS|1|5|C|3808
9YPS|1|5|G|3809
9YPS|1|5|C|3810
9YPS|1|5|G|3811
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eL41
Coloring options: