IL_9YPS_118

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPS_118 not in the Motif Atlas

Homologous match to IL_9PN5_088

Geometric discrepancy: 0.0477

The information below is about IL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.4

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

12

Unit IDs

9YPS|1|5|G|3895
9YPS|1|5|C|3896
9YPS|1|5|G|3897
9YPS|1|5|G|3898
*
9YPS|1|5|U|4563
9YPS|1|5|A|4564
9YPS|1|5|C|4565

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13