IL_9YPS_125

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUGUAGAAUAA*UAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|5|G|3955
9YPS|1|5|G|3956
9YPS|1|5|U|3957
9YPS|1|5|G|3958
9YPS|1|5|U|3959
9YPS|1|5|A|3960
9YPS|1|5|G|3961
9YPS|1|5|A|3962
9YPS|1|5|A|3963
9YPS|1|5|U|3964
9YPS|1|5|A|3965
9YPS|1|5|A|3966
*
9YPS|1|5|U|4055
9YPS|1|5|A|4056
9YPS|1|5|C|4057

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA