IL_9YPS_126

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|5|G|3970
9YPS|1|5|G|3971
9YPS|1|5|A|3972
9YPS|1|5|G|3973
*
9YPS|1|5|C|4038
9YPS|1|5|G|4039
9YPS|1|5|C|4040
9YPS|1|5|C|4041
9YPS|1|5|G|4042
9YPS|1|5|G|4043
9YPS|1|5|U|4044
9YPS|1|5|G|4045
9YPS|1|5|A|4046
9YPS|1|5|A|4047
9YPS|1|5|A|4048
9YPS|1|5|U|4049
9YPS|1|5|A|4050
9YPS|1|5|C|4051

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA