IL_9YPS_129

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPS_129 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.2454

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

9YPS|1|5|G|4094
9YPS|1|5|G|4095
9YPS|1|5|C|4096
9YPS|1|5|G|4097
*
9YPS|1|5|C|4112
9YPS|1|5|U|4113
9YPS|1|5|C|4114

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain g

Large ribosomal subunit protein eL34