IL_9YPS_168

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

9YPS|1|5|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|5|U|5003
9YPS|1|5|C|5004
9YPS|1|5|G|5005
9YPS|1|5|U|5006
9YPS|1|5|A|5007
9YPS|1|5|C|5008
9YPS|1|5|G|5009
*
9YPS|1|5|U|5039
9YPS|1|5|U|5040
9YPS|1|5|G|5041
9YPS|1|5|A|5042
9YPS|1|5|A|5043
9YPS|1|5|A|5044

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain W

eL24

Chain d

eL31