IL_9YPS_205

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

9YPS|1|9|C|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPS_205 not in the Motif Atlas

Geometric match to IL_8B0X_009

Geometric discrepancy: 0.3266

The information below is about IL_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

9YPS|1|9|G|535
9YPS|1|9|A|536
9YPS|1|9|C|537
*
9YPS|1|9|G|546
9YPS|1|9|G|547
9YPS|1|9|C|548
9YPS|1|9|C|549

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain ee

40S ribosomal protein S30