IL_9YPS_208

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

9YPS|1|9|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|9|A|599
9YPS|1|9|G|600
9YPS|1|9|G|601
9YPS|1|9|G|602
9YPS|1|9|C|603
9YPS|1|9|A|604
9YPS|1|9|A|605
9YPS|1|9|G|606
9YPS|1|9|U|607
9YPS|1|9|C|608
*
9YPS|1|9|G|635
9YPS|1|9|C|636
9YPS|1|9|U|637

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

Small ribosomal subunit protein uS5

Chain DD

Ribosomal protein S3

Chain JJ

Ribosomal protein S9 (Predicted)

Chain ee

40S ribosomal protein S30