IL_9YPS_254

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9YPS|1|9|A|1580, 9YPS|1|9|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|9|G|1550
9YPS|1|9|U|1551
9YPS|1|9|G|1552
9YPS|1|9|C|1553
9YPS|1|9|C|1554
9YPS|1|9|U|1555
9YPS|1|9|A|1556
9YPS|1|9|C|1557
9YPS|1|9|C|1558
*
9YPS|1|9|G|1577
9YPS|1|9|U|1578
9YPS|1|9|A|1579
9YPS|1|9|A|1580
9YPS|1|9|C|1581
9YPS|1|9|C|1582

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S3

Chain KK

Small ribosomal subunit protein eS10

Chain QQ

uS9

Chain UU

uS10

Chain dd

eS29